Myotherapy, Melbourne

Headaches at the Base of the Skull: Causes, Symptoms and Treatment Options

Where your headache is coming from is rarely where you feel it

A headache at the base of the skull that radiates up the back of the head, over the top, and sometimes even behind the eye. It may have begun after a car accident or a fall, or it may have crept up slowly over months of poor posture and desk work. It worsens when you look up, worsens when you turn your head, and settles a bit when you rest. You may have already seen a GP or a neurologist, and they have ruled out migraine, tension, and the usual suspects. What you are left with is a puzzle: a headache that is clearly connected to your neck, but that regular massage and stretching have not touched. This is where the Watson Headache® Approach makes its entry. It is not a treatment for all headaches, but it is a precise, researched protocol for one specific thing: headaches driven by dysfunction of the upper cervical spine, the C1, C2, and C3 segments at the very base of the skull. Unlike a general massage, which releases tension everywhere, the Watson method is a diagnostic tool first and a treatment second. It finds the exact segment of the neck that is driving your headache, reproduces the headache to confirm it, and then uses specific, gentle techniques to restore normal function to that segment. For people with cervicogenic headache or occipital neuralgia, it is genuinely different, and it works.
A headache at the base of the skull is almost never just tension. The upper cervical spine is wired directly to the head, and when those segments move wrong or get stuck, they send pain signals all the way up to the top of the skull, behind the eye, and into the temple. Finding which segment is the problem, rather than treating the whole neck, is what transforms the outcome.

Understanding upper neck–driven headaches

The upper cervical spine, the three vertebrae at the base of your skull called C1, C2, and C3, has an unusual relationship with the head. These segments are wired to the trigeminal nerve, the largest sensory nerve in the head. When a C1, C2, or C3 segment moves abnormally, gets stiff, or becomes irritated, that irritation is directly relayed to the trigeminal system, which interprets it as head pain. This mechanism is called the trigeminocervical complex, and it is the reason that a stiff or misaligned neck segment can feel exactly like a headache. That headache will typically be one-sided, worse when the neck moves or sustains an awkward position, and often located at the base of the skull, radiating upward into the back of the head, over the crown, and sometimes forward to behind the eye or temple. It is not a migraine (which usually has a pulsing quality and nausea), not tension-type (which is bilateral and diffuse), and not a cluster headache. It is cervicogenic: driven by the cervical spine. And because it is driven by a biomechanical problem, it is one of the most treatable headaches there is.

Three headache patterns from the neck: knowing which is yours

Upper neck dysfunction can show up as three distinct patterns. Understanding which one applies to you is the first clue to the right treatment.

Pattern 1

Cervicogenic
Postural, movement-triggered
A dull, tightening, one-sided headache at the base of skull, worse with neck movement or sustained posture such as looking up or working at a computer. Tender over the upper cervical segments. Eased by rest and gentle neck movement in the opposite direction. Caused by joint dysfunction, muscle tightness, or stiffness in C1–C3.

Pattern 2

Occipital Neuralgia
Sharp, nerve-based
Sharp, stabbing, shock-like pain in the distribution of the occipital nerves (the greater, lesser, or third occipital nerves). Pain comes in bursts lasting seconds to minutes, follows a specific nerve pathway, and can be triggered by touch over the nerve or certain neck movements. More neuropathic in character than mechanical.

Pattern 3

Referred Pain
Behind the eye & temple
Pain originating from the upper neck but felt behind the eye, in the temple, or across the forehead. Happens because of the way the trigeminal nerve receives input from C1–C3. Often worst on one side. Worse with neck movement or strain. Responds to upper cervical treatment even though the pain is felt distant from the source.
Manual Therapy for Migraines Melbourne

Why posture and neck movement make it worse

One of the defining features of a cervicogenic headache is that it gets worse with specific neck movements or postures. This is the mechanical signature of the condition, and it is what distinguishes it from migraine or other primary headache disorders. Looking up, turning the head to one side, holding the head forward (as in desk work), or sustaining any position that strains the upper cervical spine will trigger or aggravate the pain. Conversely, movements that ease tension in the neck, or simply resting, tend to settle it. This happens because the upper cervical segments control a huge amount of proprioceptive (position-sensing) traffic back to the brainstem and trigeminal system. When those segments move abnormally or get stuck, that proprioceptive signal is distorted, and the trigeminal system interprets it as pain. The stiffer or more misaligned the segment, the worse the signal. A segment that is locked in a forward-head posture will send constant irritation signals. A segment that has lost one direction of movement, such as rotation to the right, will fire up pain when the head is turned that way. This is not permanent damage. It is mechanical dysfunction, and it is reversible.
If your headache worsens with neck movement or sustained posture, your neck is the source. The Watson Headache® Approach finds the exact segment and restores it. Book an assessment at MyoFitness. No referral required.

Your Watson Headache treatment plan at MyoFitness

Assessment and treatment follow the protocol systematically. Every plan is individual, built around your assessment findings, but the sequence is predictable and evidence-based.

Phase 1 Identify & Isolate First session

We systematically assess each of the upper three cervical segments using the Watson protocol, applying gentle pressures to C1, C2, and C3 individually. The goal is to reproduce your typical headache and identify which segment is at fault. Once we locate the faulty segment and confirm it by reproduction and resolution, we know exactly what we are treating.

Outcome: You know which segment is driving your headache, and so do we.


Phase 2 Restore & Correct Sessions 2–8, typically

We use specific Watson techniques to restore normal movement and position to the faulty segment. This may involve gentle mobilisation, soft tissue release in the muscles around the segment, and sometimes dry needling of trigger points in the suboccipital muscles. We also address any secondary muscle tension through the neck, shoulders and jaw that has built up as a result of protecting the headache.

Outcome: Headache frequency and intensity reduce progressively. Most people notice real improvement within 3–4 sessions.


Phase 3 Stabilise & Maintain Final sessions and beyond

Once the segment is restored, the job shifts to keeping it that way. We teach posture correction, provide ergonomic advice for desk work or your activity, and give you a simple daily routine of neck mobility and control exercises. Most people can then maintain their improvement with occasional top-up sessions when needed.

Outcome: Lasting improvement. The segment stays mobile and the headache does not return.


 

If your headache worsens with neck movement or sustained posture, your neck is the source. The Watson Headache® Approach finds the exact segment and restores it. Book an assessment at MyoFitness. No referral required.

The Watson Headache® Approach: how it differs from a general massage

This is the crucial distinction, and it is worth spelling out clearly because many people have had neck massage or general physiotherapy and found it did not touch their headache. Here is why, and how Watson is different.

General massage or physiotherapy

Treats muscles broadly. Releases tension across the whole neck, shoulders and upper back. Improves general circulation. Feels good and provides temporary relief. But does not identify or address the specific joint segment causing the headache.

Watson Headache® Approach

Isolates and diagnoses the faulty segment. Uses a specific protocol of gentle pressures applied to C1, C2, and C3 individually. Reproduces your typical headache to confirm which segment is at fault. Then uses precise techniques to restore function to that segment alone.

The key Watson principle

Temporary reproduction of your typical headache during examination is diagnostic. As the specific technique is sustained and applied correctly, the reproduced pain lessens and resolves within 30–90 seconds. This tells the practitioner the segment is responding and is indeed the source.

The outcome

Treatment targets the root cause, not just the symptom. Once the faulty segment is restored to normal movement and position, the headache does not simply ease temporarily. It stays better, because the biomechanical problem has been resolved.

Why scans often don't explain headache

Most neck headaches don’t show clearly on MRI or X-ray. While imaging is valuable for ruling out serious pathology, the small movement dysfunctions occurring at C1, C2, and C3 are functional rather than structural. The joints may appear normal on a scan while still producing significant headache through abnormal movement and irritation of the upper cervical nerves.

Long-term management, not endless treatment

The goal is lasting improvement, not temporary symptom control. Once the dysfunctional upper cervical joint has been restored to normal movement, treatment gradually shifts toward maintaining that improvement. Education, posture advice, ergonomic changes, and simple home exercises help reduce repeated loading on the upper neck and minimise recurrence.

Melbourne Suburbs Served Across All Three MyoFitness Clinics

The MyoFitness Yarraville clinic at 231 Hyde Street is accessible from across the inner west. All of the following suburbs are within easy reach of the clinic.
Yarraville
Melbourne CBD
Camberwell
Williamstown
Footscray
Coburg
Flemington
North Melbourne
Seddon
Box Hill
Kensington
Carlton

Inside the MyoFitness Yarraville Clinic

MyoFitness also operates clinics in North Melbourne at 154 Peel Street and Surrey Hills at 296A Canterbury Road. All three clinics offer Watson Headache® Approach assessment and treatment for migraine.

North Melbourne, 154 Peel Street

Yarraville, 231 Hyde Street

Surrey Hills, 296A Canterbury Road

Why MyoFitness Is Melbourne's First Choice

Established Melbourne Clinics

Three well-established clinics across North Melbourne, Yarraville, and Surrey Hills, each delivering the same standard of clinical care.

Multi-Disciplinary Team

A clinical team spanning remedial massage, myotherapy, physiotherapy, lymphatic drainage, and psychology under one roof.

Australian Industry Awards

Recognised for clinical outcomes, patient experience, and professional standards across the allied health industry.

Assessment-Led Treatment

Every session begins with a clinical assessment. Treatment is directed at the actual cause of your pain, not just the location where you feel it.

Cervicogenic versus occipital neuralgia: know the difference

Both of these conditions cause pain at the base of the skull and both respond to hands-on treatment, but they are different enough that the treatment emphasis shifts. It is worth knowing which one you have, because it changes what to expect.
Cervicogenic: dull, tightening, one-sided, worse with movement or posture, tender over joints
Cervicogenic is mechanical joint dysfunction; the joints move wrong
Cervicogenic typically worse with neck movement
Occipital neuralgia: sharp, stabbing, shock-like, bursts lasting seconds to minutes, follows nerve pathway
Occipital neuralgia is nerve irritation; the Greater Occipital Nerve is compressed or inflamed
Occipital neuralgia can be triggered by light touch over the nerve or certain movements

Frequently Asked Questions

The Watson Headache® Approach is a specific diagnostic and treatment protocol for headaches driven by the upper cervical spine (C1, C2, C3). Unlike general massage or physiotherapy, which treats muscles broadly, Watson systematically isolates each of the three upper cervical segments using gentle applied pressures. The method reproduces your typical headache to confirm which segment is at fault, then applies specific techniques to restore function to that segment alone. This precision is what makes it so effective. A standard massage might release tension everywhere, but Watson finds and fixes the one thing causing your headache.
Reproducing your typical headache during assessment is diagnostic. The practitioner applies gentle, sustained pressures to each upper cervical segment in turn, and if a segment is at fault, reproducing that familiar pressure will briefly bring on your typical headache. This is safe—it is controlled, temporary, and lasts only 30–90 seconds. As the technique is maintained and done correctly, the reproduced pain lessens and resolves, which confirms that segment is the problem and is responding to treatment. Without this reproduction, we cannot be certain we are treating the right thing.
Yes, absolutely. This is called referred pain, and it is one of the most commonly missed diagnoses. The upper cervical segments are wired into the trigeminal nerve system, which supplies the head and face. When C1, C2, or C3 is irritated or dysfunctional, that irritation is felt as pain behind the eye, in the temple, or across the forehead, even though the actual source is in the neck. The Watson method still applies: we identify which segment is at fault, restore it, and the referred pain clears as the neck problem is fixed. Many people with “temple headaches” are actually experiencing cervicogenic referred pain.
Most people notice real improvement within 3–4 sessions, though this depends on how long the problem has been going on and how stiff or misaligned the segment is. Acute headaches, especially those triggered by an injury or recent posture change, often respond quickly—sometimes within 1–2 sessions. Longer-standing headaches may take 6–8 sessions to fully resolve. The treatment plan is adjusted based on how you respond, and we will tell you by session 2 or 3 whether the approach is working for you.
Occipital neuralgia is a sharp, stabbing, shock-like pain that follows the distribution of the Greater, Lesser, or Third Occipital Nerves. The pain comes in bursts lasting seconds to minutes and can be triggered by light touch over the nerve. Cervicogenic headache is a dull, tightening, one-sided pain caused by joint dysfunction in the upper cervical spine, worse with movement or sustained posture. The two can coexist—a dysfunctional cervical segment can irritate the Greater Occipital Nerve as it exits the skull. Assessment tells the difference, and if both are present, treatment addresses both.
No referral is required to book a myotherapy appointment. You can book directly at any of the three MyoFitness Melbourne clinics by calling 03 9028 4087 or booking online. We are at Yarraville, 231 Hyde Street; North Melbourne, 154 Peel Street; and Surrey Hills, 296A Canterbury Road. All three clinics are open Monday to Friday 8am to 8pm, Saturday 8am to 4pm, and Sunday 9am to 12pm. If your headache has other underlying causes that need ruling out, we will advise you to see a doctor, but for cervicogenic headache and the Watson Headache® Approach, no referral is needed.
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MyoFitness accepts NDIS funding for physiotherapy, myotherapy, remedial massage, and psychology.